Protein ZmTRAF55
ZmTRAF55 is a protein in the TRAF family.
Information
Coreg Name: ZmTRAF55
Species: Maize
Coreg Family: TRAF
Gene Name(Synonym): ZmOrphan47
Uniprot ID: B4FNG2
Subgenome: 2

Protein ZmTRAF55

ZmTRAF55 is a protein in the TRAF family.

Overview of domains present in v5 transcripts
PF00651
Zm00001eb110590_T001
Zm00001eb110590_T002

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d007068DAPseq no logo sequence fimo position
Zm00001d007068DAPseq no logo sequence fimo position
Zm00001d007068ChIPseq no logo sequence fimo position
Zm00001d007068PChIPseq no logo sequence fimo position

Interactions where ZmTRAF55 is the regulator  
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There are 6762 protein-dna interactions that fit this criteria. download excel sheet

Interactions where ZmTRAF55 is the target  
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There are 77 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb110590_T001 from maize genome v5

Amino Acid Sequence
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MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00651
PF00651
Hover here to show all domains

Nucleotide Sequence
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AAGCAAAACCACACACACACACGCC...

GRMZM2G172210_T01 from maize genome v3


Related TFome: pUT6011

Amino Acid Sequence
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MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

Nucleotide Sequence
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CAAACCAACTCGGACCAAGCAAAAC...

Zm00001d007068_T001 from maize genome v4

Amino Acid Sequence
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MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKV
ILSARSPVFRAQLFGPMKDKDMKCIKIEDMEAPVFKALLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALER
LKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVCLKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEH
SVSPCLYSTEVLDGGDANGRRVKPRI

Nucleotide Sequence
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AGGTGTGTGCAACCTTCTCTCGTAT...

Zm00001eb110590_T002 from maize genome v5

Amino Acid Sequence
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MGAGRVCRGGPFSASPAAGAAAGRPFPPLTASSSSSPSSAPSETASTSVTKTVNGSHHFKIAGYSLSKGIGVGKFIASES
FNVGGFDWAIYFYPDGKSGEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTHFGRSLESGPYTLKYRGSMW
GYKRFFKRVALETSDYLKDDCLLVNCTVGVVQSHTEGPKIYTIPVPRSNMALHIGQLLTSGKRTDIAFEVDGEMFPAHKA
LLHFMYWDELPDLEELTGVNTTWVSTLMAQHLLAAADRYALERLKLLCELKLCEDVAINTVANTLALAEQHHCYQLKTVC
LKFVALPENLKAVMQTDGFDYLQQSCPSLLTELLEYVAKIGEHSVSPCLYSTEVLDGGDANGRRVKPRI

Nucleotide Sequence
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AAAACCACACACACACACGCCACCT...


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